rs27378663 SNP Detail

Summary

• ID
  rs27378663
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103591619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTGCACGT GAATCCGCTT AAGTGGCAGA CAGCACGTGG
  GCAAGTGCTC AGAAGGGAGG GGACCACTAC AGCTATGGGA CCTTCCATGG CTTCGACGCT
  K
  AGTGATGACG TAAGAACACG CCGCGGATCT CCGCTACGCT TGCGCACTAA CTCCCGGCCG
  CCATTTCGCC ATTTGCTGCG GGTAACCTGG CTATGACAGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37571889	NES09064750	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27378663					SNP	G	T	T	T	T	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571889	NES09064750	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103591619 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	1673 bp downstream
Cpgi11984	CpG island 11984	within coordinates
Gm75186	predicted gene, 75186	112 bp upstream
Nat10	N-acetyltransferase 10	4 bp upstream
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	within coordinates
Tssr19170	transcription start site region 19170	139 bp upstream
Tssr19171	transcription start site region 19171	203 bp upstream
Tssr25490	transcription start site region 25490	333 bp upstream
Tssr25491	transcription start site region 25491	184 bp upstream
Tssr25492	transcription start site region 25492	102 bp upstream
Tssr25493	transcription start site region 25493	within coordinates