rs27378667 SNP Detail

Summary

• ID
  rs27378667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103589630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGTCT ACAGAGTGAG
  TTCCAGGACA GCCAGGGCTG AGAAACCCTG TCTCAAAAAA CCAAACCCCC CCCCCCAAAA
  AAAAAGAAGA AGTTCTTCTC TGACCCCACA CAACACACAC AATTAAAACA TAGTAATAAT
  AATAATAAAA GCTTAAATTC ATATGTTACG TATAAAATGA GAGAAAACAA ATATTTCTGA
  Y
  TCAATGTGTT TCTTTGGGTG AGAAGCCACA CTAACGGCTC TATACAGGTG ATTTTAAAAA
  GTACCATATG GGTTATTGGG TGTACAGTAG TACAATATTT GCCTAGCTGG GGACCTAAAC
  TCAATTCCTC CAGCATTTAA TAAAATATAA ATGTTATCAA ATTACCTATA ACAAATAGGC
  CCCCCCCCCC AAAAAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37571893	NES09064819	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27378667					SNP	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571893	NES09064819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103589630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11984	CpG island 11984	1439 bp proximal
Nat10	N-acetyltransferase 10	within coordinates
Rr55318	regulatory region 55318	770 bp proximal
Rr367263	regulatory region 367263	1912 bp upstream
Tssr25490	transcription start site region 25490	1637 bp downstream
Tssr25491	transcription start site region 25491	1793 bp downstream
Tssr25492	transcription start site region 25492	1878 bp downstream
Tssr25493	transcription start site region 25493	1893 bp downstream