rs27379874 SNP Detail

Summary

• ID
  rs27379874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93989652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTGTTG ATGCACAAGC
  TGTGGCCCTG ACTCTGAAAA CAGGCCTTAT GCTTGAGCAG CAAATACTTT ACCCACCAAG
  CAATCTCCCC TGCCCTGAAG GGAAGCTTTA AGGGGACACA AAAATCTGAT CTCTGGAAGA
  GCATGGAAGT ACTTCAGCGG ACAGGGAGAC AGACATAAAG TAAACAAATG GAGTCGCTGT
  Y
  CAGGCTCTAC TTAGAGGTCC AGGGGCTCAT TCAATATCTC CACTCAAGCT CAATACATTT
  ATTGTTTGTT TTTGTTTTGA GACAGGATGT CAAATATCCT AAGCTGCCTC TACCTCCCAA
  GGTTTGAGAT TCCAGGTATG TGACACCATT TTTTTTTCTT ACTTCAGTGC TGGGGATTGA
  ACCCAGAGCT TTACACATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595899	NES09085029	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379874					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595899	NES09085029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93989652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	906 bp distal
Gm39885	predicted gene, 39885	within coordinates
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	1398 bp upstream
Mir670hg	MIR670 host gene (non-protein coding)	1329 bp downstream
Rr57226	regulatory region 57226	251 bp distal
Rr367242	regulatory region 367242	853 bp downstream
Tssr25319	transcription start site region 25319	1392 bp upstream