rs27379880 SNP Detail

Summary

• ID
  rs27379880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93988790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCCCTTA CGACTGCGGA
  AGGCTGCGCG CTGATTGGCC AGTGATACCT AACTGGGTTT AGCTCACATT TCAGGAAGGA
  ATGGAACCGG AAAGGGAAGA ATATAGTAGA AGTCCGGGAG GAGCTGGAGT AGTGCTTGTG
  ATTACGTCTT AGTAATAACC GCTTTCGGAT TGTTAATTCC TCAGACTTTT CAGATGAAGG
  Y
  TTACGGTTCC CCTTTGTCTG CAGAGCACGC TTTCGCTCCA TTTTTTTGAA TGACTGCCTT
  AGCTCCCACA ATGAACTTTA TACTTGTTCC CAATAATTCG GAATTCCAGA AAACTCTACT
  GTGTAGTAGC GTTAACAGTT GTAAGATGAA TGAAAAGTAT CCTACAAGAA CAGAGCTTAT
  GGAGCAATTC TGGGAAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595905	NES09085088	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	T	T
ss146951436	ENSMUSSNP350217	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379880					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595905	NES09085088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93988790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	44 bp distal
Gm39885	predicted gene, 39885	within coordinates
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	536 bp upstream
Rr57226	regulatory region 57226	within coordinates
Rr367242	regulatory region 367242	within coordinates
Tssr25319	transcription start site region 25319	530 bp upstream