rs27379886 SNP Detail

Summary

• ID
  rs27379886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93987713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATAGGAA GACTTTGTTT
  TCCCAGAACA GCGCTTCTTA GTCATTGAAA CTCCAGAATA ATTTACCAAG ATTTCCTCCG
  ACACCGCCTC CACCTCCCCC CTCCCCAAAA GGACTTGTTA AATTACATGA AACAAACCCA
  ATTCAAGTAA CTGGAGAATC AAGTTTCCCA AGATCCTAAC TTCTGAAATC GTTGTCCCTG
  Y
  AACCCTTCTT CCTATCTTCA CCTATGCTCT CATCCATAGC ACAGGGCCAG TTTTCAAGCC
  AAGTGAAAAA CTTTATTTTA AAAAATAAAT AAACACTGCA AGGGACACAG CGGACAATGC
  GCCTGACTCC GGCCGCCTGC CCAGGAGGGC TCCAACAGGA CAAGTCCGGG GAGTTAAGAA
  AGGTCTCCTC CGTGCCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595911	NES09085082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379886					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595911	NES09085082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93987713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	94 bp proximal
Gm39885	predicted gene, 39885	984 bp upstream
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	within coordinates
Rr57226	regulatory region 57226	within coordinates
Rr367242	regulatory region 367242	785 bp upstream
Tssr25317	transcription start site region 25317	1967 bp upstream
Tssr25318	transcription start site region 25318	1175 bp upstream
Tssr25319	transcription start site region 25319	513 bp downstream