rs27379889 SNP Detail

Summary

• ID
  rs27379889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93987281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTACTT GAAATATTTT
  CTCCTATTAT TAGGGTGTTG TCCCAAAAGA TTAACTGTCA TGTCTTTTCT AAGTCGTTTA
  AATGTTCTTT AATGAACAGA ACAAACCTGA AAAGTAACAT GATTTCTGTC CTGTGTTTAG
  TCCGTAGGCA ACCGCACCCC AATATTCTAT AAAATGTTTG AGTCGTGAAC AGTGAGTTAC
  R
  AAACACCAGA GAGCCACACA TACATCATGA TTACATGGGT GTTTGTTTTA AAGCCCTTCT
  CTCAAAAAAT AGAAACAAAG GTGAGAGGGC TGAACTAGGA TTTTCTCAAC TTCTCTGATA
  CGACCTTCGT TCTCATTTTT AAAATCTGTC AACTGAAAAG AAGAAGGTTC GCGTGTTTTG
  GTCACTTTTT GTAAAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595914	NES09085079	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379889					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595914	NES09085079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93987281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	526 bp proximal
Gm39885	predicted gene, 39885	1416 bp upstream
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	within coordinates
Rr57226	regulatory region 57226	within coordinates
Rr367242	regulatory region 367242	1217 bp upstream
Tssr25317	transcription start site region 25317	1535 bp upstream
Tssr25318	transcription start site region 25318	743 bp upstream
Tssr25319	transcription start site region 25319	945 bp downstream