rs27379890 SNP Detail

Summary

• ID
  rs27379890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93987211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGTGAT TTTGGAAAGT
  TGTATAAAAT CACTGTTTGC CCCACATCAA GGAAAGGGGC TCACAAACTC ATTTCTACTT
  GAAATATTTT CTCCTATTAT TAGGGTGTTG TCCCAAAAGA TTAACTGTCA TGTCTTTTCT
  AAGTCGTTTA AATGTTCTTT AATGAACAGA ACAAACCTGA AAAGTAACAT GATTTCTGTC
  Y
  TGTGTTTAGT CCGTAGGCAA CCGCACCCCA ATATTCTATA AAATGTTTGA GTCGTGAACA
  GTGAGTTACA AAACACCAGA GAGCCACACA TACATCATGA TTACATGGGT GTTTGTTTTA
  AAGCCCTTCT CTCAAAAAAT AGAAACAAAG GTGAGAGGGC TGAACTAGGA TTTTCTCAAC
  TTCTCTGATA CGACCTTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595915	NES09085078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379890					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595915	NES09085078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93987211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	596 bp proximal
Gm39885	predicted gene, 39885	1486 bp upstream
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	within coordinates
Rr57226	regulatory region 57226	within coordinates
Rr367242	regulatory region 367242	1287 bp upstream
Tssr25317	transcription start site region 25317	1465 bp upstream
Tssr25318	transcription start site region 25318	673 bp upstream
Tssr25319	transcription start site region 25319	1015 bp downstream