rs27382137 SNP Detail

Summary

• ID
  rs27382137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93307187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCAGGA CACGCAAGCT
  GGGACCTCGC CCAATGTCCG GATTCCAGAA GAGAAGTGAA GCCAAGCCCC TGAGGTCATC
  GCCGCCTGTG CTGGTCAGCA CTGCTCCCAC ACACTCTTCC TAGGTCCTCA TCCCTTGGAG
  AAGGAGCTGG AAGCCTCAGA AGGTCTACAT CTGCTGCTGT CAGCTTTCAG CAGTATGGCC
  Y
  AGAGAAAGCG GCTTCCTCTT TGACCTTCAG ACCCCTTTCC CCTGAGACCC CTGACTCTTT
  ATCGAGATAG CATGCATGAG TGCCCAGTGC CTTATGTGTC ATCGATAGAT TCTGTTGTTC
  TTTCAAGCGT CCCCAAAGGA AGAAACAGAC ACTTCTTTTT CTGGAACCCC AGGCTCCTCT
  ATCTGATATC GACTCCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37598756	NES09099053	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27382137					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598756	NES09099053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93307187 () rs orientation: forward

Symbol	Name	Function Class
Rr561215	regulatory region 561215	1150 bp distal
Rr561216	regulatory region 561216	1635 bp distal
Rr561217	regulatory region 561217	26 bp distal
Rr561218	regulatory region 561218	643 bp proximal
Rr561219	regulatory region 561219	898 bp proximal