rs27382263 SNP Detail

Summary

• ID
  rs27382263
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93286501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGGTGG TATCTTCTTA
  TTATTGTTAC ATCAATCCAT CCATCCATCC ATCCACCCGC CCACCCACTG TGTGTCCTTC
  TACCATGTAG TTCCTGGGCC TTGAACTCAT ATCGCGAAGC TTAGAAGTGA GCGCCCTTAC
  AGGCTGAGCC ACCTCTGGAT CCTACTGAAC ATATTTAAAC AGTGTGTATC TGCACTGGAG
  W
  CTTGGTGAGG AGTCACAGAG AGCAGCTCCT GCCATTCCGT GCCTGCAGAG CCTCCTGGCA
  GCTGCTGGGA ACTGGCAATC CCCACCTTCC TCCTGGGCTG GTTTGATATG GGGTAAGGCC
  AGCACCCAGA TGTCCTCTCC TTGGGAAAAG CCCTGATCCG CCCATGTGCC TGGATGACAA
  AGCCACACAC AGCAGCTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598882	NES09099527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382263					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598882	NES09099527	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93286501 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr561203	regulatory region 561203	1172 bp distal
Rr561204	regulatory region 561204	1138 bp distal
Rr561205	regulatory region 561205	1323 bp proximal
Tssr18995	transcription start site region 18995	1478 bp downstream