rs27382271 SNP Detail

Summary

• ID
  rs27382271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93285000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCACGTG CACACACACA
  CACACACACA CACACACACA CACACACACG CCTAGAGGCC AGGGTTCAGA GAGGAAGACT
  GTCTACATGA CAGAGCATGA CTCAAGGCCT AAACACCTAC TCACTCGTTC TATGACTTCA
  AAGACCTGCT CTTCCAATGA GTCTGCCGTG TTTCTCTGTC CTCTATAGTG ACGCCTCATC
  Y
  GTCTCCCTGC AGGCACACTA ATAATCCATC TCCCGAGACA GCCAGCGGGA GAGGTTTTGC
  TCCCCGTACA TGTGCAACTG CTAACTGTTG TTGCTATCAA CACGTGGTGG ATATGTACGC
  ACCAAGTGCT TACTACACAC CAGGGATTGT TTTGAAGGGC TGTGCATGCA CGTGTGTGGG
  AACACATACT CTTCTCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598890	NES09099583	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382271					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598890	NES09099583	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93285000 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr561200	regulatory region 561200	1987 bp distal
Rr561201	regulatory region 561201	1824 bp distal
Rr561202	regulatory region 561202	1511 bp distal
Rr561203	regulatory region 561203	308 bp proximal
Rr561204	regulatory region 561204	342 bp proximal
Tssr18992	transcription start site region 18992	1822 bp downstream
Tssr18993	transcription start site region 18993	1213 bp downstream
Tssr18994	transcription start site region 18994	1150 bp downstream
Tssr18995	transcription start site region 18995	8 bp upstream
Tssr25289	transcription start site region 25289	1968 bp upstream
Tssr25290	transcription start site region 25290	1488 bp upstream