rs27382279 SNP Detail

Summary

• ID
  rs27382279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93283213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC GCCACACACT GCCCTTCCTG
  Y
  GACCTTGAAT CCAGAGACCA CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37598898	NES09099647	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	T		T	T	T	C		T	T	C	T		C
ss45225676	mCV23857801	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss320395933	CHEV_2_93293025	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27382279					SNP	C	C	C	T	T	C	T	C	T	T	T	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598898	NES09099647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93283213 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr561200	regulatory region 561200	200 bp distal
Rr561201	regulatory region 561201	37 bp distal
Rr561202	regulatory region 561202	within coordinates
Tssr18992	transcription start site region 18992	35 bp downstream
Tssr18993	transcription start site region 18993	561 bp upstream
Tssr18994	transcription start site region 18994	601 bp upstream
Tssr18995	transcription start site region 18995	1795 bp upstream
Tssr25289	transcription start site region 25289	181 bp upstream
Tssr25290	transcription start site region 25290	277 bp downstream