rs27383765 SNP Detail

Summary

• ID
  rs27383765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90376055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA TATTTGCATC TCCCTAATAA
  R
  AAAATCACTT CCTAACCTTT TGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37605892	NES09103555	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G		G	A	G	G		G	A	G
ss45213458	mCV24351488	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss146920529	ENSMUSSNP6908476	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320390971	CHEV_2_90385868	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27383765					SNP	G	A	A	A	G	G	G	G	A	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605892	NES09103555	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90376055 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397112	regulatory region 397112	1704 bp upstream
Rr560527	regulatory region 560527	1600 bp distal
Rr560528	regulatory region 560528	within coordinates
Rr560529	regulatory region 560529	1316 bp proximal
Tssr25106	transcription start site region 25106	1228 bp downstream