rs27383766 SNP Detail

Summary

• ID
  rs27383766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90375697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATGGACA GCAAAGGTAC
  AAATACCAAA GCAGGTGGCA GTCAGAGGCC AACTTTGAGG GATCAGATCT CCCCTTCCAC
  CACGTAGGTC CTAGGGATCA AACTCAAGTT GTCAGGCTTG GTGGCAAGAG CCTTCACCCA
  CTAAGCCAAC TCAGCCAAAC TCCACTTTAA TAAGAGCAAA GTTCTAAAAC CCAGGGAACA
  R
  TCTGACTCAA AGCCACACAT TTAGCCTGTG AATGGTTTTC CACTTGGCAA GTCAGTTCCT
  CATCGCTGTG TGATAATGCC AGTGAGTGAA TGGGCAATCA GATCGGGGAA ATTCCTAGTG
  ATCATCAGAA TGGAAAGGAA AGAAAAGGCA AGGAGGAAGC AAGAGGAGCT GTTGGCAAGG
  CCTCCTAAGT TCTGGCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605893	NES09103554	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383766					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605893	NES09103554	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90375697 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560526	regulatory region 560526	1810 bp distal
Rr560527	regulatory region 560527	1242 bp distal
Rr560528	regulatory region 560528	within coordinates
Rr560529	regulatory region 560529	1674 bp proximal
Tssr25106	transcription start site region 25106	1586 bp downstream