rs27383768 SNP Detail

Summary

• ID
  rs27383768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90374989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA CAGAGTAATT GAAGGTGTGG
  R
  AGGAATGTGA ACAAGGGCAG GGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37605895	NES09103592	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G		G	A	G	G		A	A	G	G		G
ss45208689	mCV24351475	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss146920519	ENSMUSSNP6341470	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320390968	CHEV_2_90384802	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27383768					SNP	G	G	A	A	A	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605895	NES09103592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90374989 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	1661 bp downstream
Rr560526	regulatory region 560526	1102 bp distal
Rr560527	regulatory region 560527	534 bp distal
Rr560528	regulatory region 560528	619 bp proximal
Tssr25105	transcription start site region 25105	1817 bp upstream