rs27383769 SNP Detail

Summary

• ID
  rs27383769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90374311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATCACA TTGGAAACAT
  GGATCTTCTG CGGCTACACT TTTACAAGAC AACAAAGAAG CTAACTGGCA AATGTTCCCT
  TTAAGCAGAG TTCACAACCC ATGTCCATTC CCTTCAAGAC TGAGAACCAA TGTCCACTAG
  TCACTTGGCA TCTTTCAAAG GGTATCTACC ACACCCCAAA AGATTTGCAA ACTCCTGTCA
  Y
  ATGTAGCTTA GTAGAGTTGA TCCTTCCAGA TCTTGGTGTT TGCCCCTCAC TCAAACCCTA
  CACCCTATCT ATAAGATCAA GCAGTGACAG CCCAGCACCT CACTTCTTCC ACTATACCTT
  CAGGCCCAGC CAGATGGCAC CACTAAGGGA AATCAGAAGG CACCTCCAGG GGACTGGGCA
  GCAAGCCTAG GAGAAACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605896	NES09103591	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383769					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605896	NES09103591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90374311 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	983 bp downstream
Rr560526	regulatory region 560526	424 bp distal
Rr560527	regulatory region 560527	123 bp proximal
Rr560528	regulatory region 560528	1297 bp proximal
Tssr25105	transcription start site region 25105	1139 bp upstream