rs27383770 SNP Detail

Summary

• ID
  rs27383770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90374076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGACCA TCTGGATGAT
  GGAATAACAT CCATCTAATT TGGCCCTGTG AGGGAAGGAG GGAGGGAGGG AGGGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTTA CTCATTGGTT
  CATTCCTAGG TGACTTGTAG CCCTTACAAG CCCCCAGCCC CTGTTCAGGG GCCAGCAGAC
  R
  CATTGTTGAA TTGACCATCT GTTTTTGAAA CAACAGACAT CACATTGGAA ACATGGATCT
  TCTGCGGCTA CACTTTTACA AGACAACAAA GAAGCTAACT GGCAAATGTT CCCTTTAAGC
  AGAGTTCACA ACCCATGTCC ATTCCCTTCA AGACTGAGAA CCAATGTCCA CTAGTCACTT
  GGCATCTTTC AAAGGGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605897	NES09103590	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383770					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605897	NES09103590	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90374076 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	748 bp downstream
Rr560526	regulatory region 560526	189 bp distal
Rr560527	regulatory region 560527	358 bp proximal
Rr560528	regulatory region 560528	1532 bp proximal
Tssr25105	transcription start site region 25105	904 bp upstream