rs27383774 SNP Detail

Summary

• ID
  rs27383774
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90372974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGCTGAG TCTTAGAGGT TTCCTTGGTT CTGTCCCTTC
  ATTCGGCTCC TTACAGGGTC AAGTATAGAA CCAATATCTT AGCTTTCAAT CCCTTACGAG
  M
  CACGAAGCCA CACTGTGAGC CATGCAGTAG GAGGAGACAG ACAGTGTTGC CATAGTCTGA
  AGCAAAGTTA GATCTGCTCT ACCTACCTGC TCACACTTCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605901	NES09103626	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383774					SNP	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605901	NES09103626	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90372974 () rs orientation: forward

Symbol	Name	Function Class
A630073K07Rik	RIKEN cDNA A630073K07 gene	1798 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	54 bp upstream
Rr560526	regulatory region 560526	34 bp proximal
Rr560527	regulatory region 560527	1460 bp proximal
Tssr25104	transcription start site region 25104	1819 bp upstream
Tssr25105	transcription start site region 25105	168 bp downstream