rs27383775 SNP Detail

Summary

• ID
  rs27383775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90372870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGAAA GAGGTGGAGC
  TAGTGCTGAA ATCCAATTCT CTAGGCTCCT AAACCACACT TCTTATGATG ACACACTGCT
  TCTTCTCACT GTCTTTGGGG GTGTACAAGC CTAGGCCATC CCTGCATGCT TACAACCTTA
  AAGGACATAC GGACACCATC ATGGTGAGTA TGCCATAGCA AAAGGCAAGC ATGTAGAAAG
  Y
  CATCCTAGCT GAGTCTTAGA GGTTTCCTTG GTTCTGTCCC TTCATTCGGC TCCTTACAGG
  GTCAAGTATA GAACCAATAT CTTAGCTTTC AATCCCTTAC GAGACACGAA GCCACACTGT
  GAGCCATGCA GTAGGAGGAG ACAGACAGTG TTGCCATAGT CTGAAGCAAA GTTAGATCTG
  CTCTACCTAC CTGCTCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605902	NES09103625	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383775					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605902	NES09103625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90372870 () rs orientation: forward

Symbol	Name	Function Class
A630073K07Rik	RIKEN cDNA A630073K07 gene	1694 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	158 bp upstream
Rr560526	regulatory region 560526	138 bp proximal
Rr560527	regulatory region 560527	1564 bp proximal
Tssr25104	transcription start site region 25104	1715 bp upstream
Tssr25105	transcription start site region 25105	272 bp downstream