rs27383816 SNP Detail

Summary

• ID
  rs27383816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90354159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAAAGTC AGAAGATGGT
  GATAAACCAC TTAGACACTG GGCAGGTCTT CCAACATCTG TAAGTCTTAG TCTTCACCTG
  AGAGAAGAGT CCATTTAAAA TCAGGCAATA CAGACAGAGT ATGTGGCATG TGATTTGCAG
  ACAGGTCAAT TCTCAAAATG CAACTGAAGT TCATGGAGCA AGCCTGCTAC CTGACTGTTC
  R
  CTAAAGTACC ACCCTCCATC ATCCTCATCC ATTTCATTTA TGGGTGCTCA TTTCCCAGTG
  CTCTCAATGT CCCAGGGCTC ATCATGGTCT TGGCCATGTG ACTATATTTA GAAGACAAGG
  AAATGATGCT CAGATGAGAG TGTCTTCCTC AAAGCCTGCG GGGATGGAAG GATGCATACC
  TAAGGAGTCT AACTCCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605943	NES09104154	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383816					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605943	NES09104154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90354159 () rs orientation: forward

Symbol	Name	Function Class
2310079F09Rik	RIKEN cDNA 2310079F09 gene	1387 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560519	regulatory region 560519	913 bp distal
Tssr25101	transcription start site region 25101	698 bp upstream
Tssr25102	transcription start site region 25102	1217 bp downstream