rs27383818 SNP Detail

Summary

• ID
  rs27383818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90351111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACATCCC TCCCTCCAGT
  GTGCAGCAAG TTTGAGGCCA GCCTGGGCTA CATGAAACCC TGTCTCAAGC CTCTCCTCTC
  ACCAAAAAAA GAAAATCTAA GTTAAACTGT TGCAAGTTAA GGACTAGCTA TACTTTAGGG
  GAAGTTCTGA GTAACCCAAA GGCATTCAAG AGACTGACAT GGTCTAGGAG GTAGCAGGGC
  M
  ACTGGCGCCA TTCAGAGCAG GTAAGAAGGG AGGAAGTAAG GGTGACAGTG ACAGATTGTA
  TCAGGCTTTG TAAGGATCTT TCTCCCTGAG GGAAAATAAG GACCATGGAG GGTTAGCTCA
  AGGAAAAATA AGTAATCCAA TTTCAATTTT TAAAAAAGGC ATTCTAGTTG CCTTGTAGAA
  GCAGACACAA GAGGGTTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605945	NES09104229	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383818					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605945	NES09104229	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90351111 () rs orientation: forward

Symbol	Name	Function Class
2310079F09Rik	RIKEN cDNA 2310079F09 gene	within coordinates
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560519	regulatory region 560519	1752 bp proximal