rs27385424 SNP Detail

Summary

• ID
  rs27385424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152070448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACTTTG AAATATTTGG
  CCTTAGTTTG TTACTGGAGG AGGATGTGTA ACTTGCAGAA AGAAGGAAAG GGTTGGATAT
  TTACTTAGAT TGGTTTTTAT TCATAGTTGC AAAGTTAGGT TACTCTATGG GAACTTTCTT
  CGCAACAAAC TAACCTACCA TACCTACTTT ATTTTGGCTT TTATGGGAAA CATCAGAGAA
  R
  CAGATCCTTA AAGGGGATGG AGGACTAGCT TCTGGGTTGC ATGGAAGTTG GGTAACTAAG
  TGGCAATATT TCCACAGTGT GCTTTTTTTG GTTCTTTTGC TCTTTGTTGC TGTATGCTTG
  CTTTTGTGTT TTGAGACTAG GACTCCTGTA GTCCAGGATG GTCTTGAGTC CAAGTGCCTC
  AGCCTTCAGA GGTATTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563057	NES08921072	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385424					SNP	G	G	G	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563057	NES08921072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152070448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12441	CpG island 12441	945 bp distal
Csnk2a1	casein kinase 2, alpha 1 polypeptide	within coordinates
Gm57421	predicted gene, 57421	983 bp upstream
Rr55821	regulatory region 55821	within coordinates
Rr59062	regulatory region 59062	1153 bp proximal
Rr397394	regulatory region 397394	1550 bp downstream
Tssr20780	transcription start site region 20780	1954 bp downstream
Tssr20781	transcription start site region 20781	1689 bp downstream
Tssr26784	transcription start site region 26784	1775 bp upstream
Tssr26785	transcription start site region 26785	1264 bp upstream