rs27385509 SNP Detail

Summary

• ID
  rs27385509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152020962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCACCTT CCACCACCCC
  AGAACTCCCC TCCCTTTATC TGAGATCAAA GGGAAAACAC CAAAAGTTCT GATCATGACC
  GTGTTGGTCT TCAGCTGAAC TCTGGAAGAA GGGGTACGTC CTGAATGATG TACCTTTCCA
  TCCCTGGCAG GACAGGAACT TGTTTTACCC TCTTCACTGG TAAGGAAGCT GGACTTGGAA
  Y
  GGGGGAGTGA GGCAAGAAGA AGCTTAGCCC CAGGGCCCTC AGAGTTCTCT TCAGAAGGCC
  TCCACCAGGG CCCTGCTCCA GGGTCTTCTT TCCTTCATCA CCAAAACTCC TCTAAATCTA
  GTCATGTGCT AAGTGGACAG CGACTGAGAA AACCCAAGGA CATTCCCAAC TCAGGTTATG
  ATCTCCTGCA TCCCCCAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37563143	NES08922005	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27385509					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563143	NES08922005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152020962 () rs orientation: forward

Symbol	Name	Function Class
Gm75354	predicted gene, 75354	1022 bp downstream
Rr374077	regulatory region 374077	348 bp downstream
Rr567308	regulatory region 567308	1546 bp distal
Rr567309	regulatory region 567309	1308 bp distal
Rr567310	regulatory region 567310	1060 bp proximal
Tssr20778	transcription start site region 20778	1303 bp downstream
Tssr20779	transcription start site region 20779	496 bp upstream