rs27385512 SNP Detail

Summary

• ID
  rs27385512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152019835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCACCT CTGAACCCAG
  AACGGCAAGA TTTCCCCAGG CAAAGATGGT CTGATTCTGG TGGTGTTTTG CCATTTGACC
  TTGGTGCAGG CTACCCAACC TCTATCACCT TCAACTCCTA ATCTGCAGAG AGGGATCACA
  TGGCACAGCT GGACTGGTCT GCGTGGTTTG TGCCTTAATT CCAGTACTTG GAAGGAAGAC
  S
  GGTCCTCAAG TTGAAGCCAT CCGGGGCTAT TGAATACCAT CTCTTCCTGA TCGCCAAGAA
  GATTCCTTCA TCAAACAGGC TTGTATAAAG CATCTGCTAC AGACAGACAC TGTGCTGGAT
  GCTGGGGACA TGTCCCCAAC CTCATGGAAC ACCCAGTCCT GAGGTATAGT GAGGTATAGG
  TCAGCAACCT GCCGTGGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37563146	NES08922078	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	C	C	C	C	C		G	G	G		C
ss320562455	CHEV_2_152003651	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27385512					SNP	G	C	C	C	C	C	C	C	C	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563146	NES08922078	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152019835 () rs orientation: forward

Symbol	Name	Function Class
Gm75354	predicted gene, 75354	within coordinates
Rr374077	regulatory region 374077	within coordinates
Rr567308	regulatory region 567308	419 bp distal
Rr567309	regulatory region 567309	181 bp distal
Tssr20778	transcription start site region 20778	176 bp downstream
Tssr20779	transcription start site region 20779	1623 bp upstream