rs27385513 SNP Detail

Summary

• ID
  rs27385513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152018655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAATGG CTCTTCTGCT
  AAGAGGTCTC TCTTTCAGAC AACGGGAGTT CAATTCCCCT AGCATCTGCA TGGTGGCTTA
  CAATTATCTA TATATCTCTA GTCCCAGACC GGATGCCTTC TCTGGACTCT GAAGGCATGG
  CACACGTGCA CAAACACACA TGCAGCAAAA CACCCATACA CACAAAATAA AGGGGAAAAA
  R
  CTAAAGAGCC AGCATGAGGG TTAGGGGTAC AGCTAAGTGG CAGAACACTA GCTTGGCATA
  CACAAGGCTC CATGCCAGAA CCAGGGCAAA AAAAGGGAGA GGGCAGTGAG AAGCCTCAGC
  TGGTAAAGGG CTGGCTGCCA AACCTGGTGA CCTGAGTCAT CCCTGGGACC CACATGATAG
  AACGGATTGA CTCTTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss37563147	NES08922141	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	G	A
ss45243930	mCV25312873	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss147962428	ENSMUSSNP1735819	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27385513					SNP	G	G	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563147	NES08922141	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152018655 () rs orientation: forward

Symbol	Name	Function Class
Gm75354	predicted gene, 75354	751 bp upstream
Rr374077	regulatory region 374077	within coordinates
Rr567308	regulatory region 567308	381 bp proximal
Rr567309	regulatory region 567309	762 bp proximal
Tssr20777	transcription start site region 20777	1610 bp downstream
Tssr20778	transcription start site region 20778	992 bp upstream