rs27385514 SNP Detail

Summary

• ID
  rs27385514
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152018335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACACTCC TCATTGGTCC TTCCTCTCTG TATCCTTGCT
  GCATGGCCCA ATGCAGGTAC ACAGTAGGTA TTCATAAAAA TAACTGGATG GTGAACTCAT
  M
  AGGGTCCCAT GACCGGTACT AAAACAAGAG CTAAACCCTC TTCTCAGGAG ACTAACAGAC
  GGAGAGGGCC TGACTCTTAC TACAGAGGAG CAAGGTCAAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37563148	NES08922148	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27385514					SNP	A	A	A	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563148	NES08922148	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152018335 () rs orientation: forward

Symbol	Name	Function Class
Gm75354	predicted gene, 75354	1071 bp upstream
Rr374077	regulatory region 374077	within coordinates
Rr567308	regulatory region 567308	701 bp proximal
Rr567309	regulatory region 567309	1082 bp proximal
Tssr20777	transcription start site region 20777	1290 bp downstream
Tssr20778	transcription start site region 20778	1312 bp upstream