rs27385516 SNP Detail

Summary

• ID
  rs27385516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152017081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGTGCCA CTCCCTGTGG GCCAAGCATT CAAACACTTG
  AACCTTTAGG GGTCATACCT ATTCAAGCCA TCATGATGCC CCTGTGTGGG TGTTTGTCTT
  Y
  TCCGTGTGGT GTTGTCCCTC ATCCCTGGGA GAGCTCTTCT GCACATCCCT GGATTATTCA
  CAGCTGGCCT CCTCCACAAA CCTCCTGTGT TCTGGGGCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss37563150	NES08922162	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs27385516					SNP	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563150	NES08922162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152017081 () rs orientation: forward

Symbol	Name	Function Class
Rr374077	regulatory region 374077	within coordinates
Rr567308	regulatory region 567308	1955 bp proximal
Tssr20777	transcription start site region 20777	36 bp downstream