rs27386971 SNP Detail

Summary

• ID
  rs27386971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91069656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTACACT TTGTTTTGGT
  GTGCTTCATG TGTCTTTTTT GTTGTTGCTT GAGAGAGCAT ATCACCAATA GCCCTGGGTG
  GTCTAGAACT CAGTCTGTAG TCAGGCTGGC CTCCACAGAG ATCCACCTGC CTCTGCCTCC
  TGAGTGCTGG GATCAAAGGT GTGAGACACC ACTGTCTATA CTGGTATTCT CTTAATCAGA
  Y
  GTGGTGGCTT ATACTTGCAA TCCCACCCAA GTTAAAACAG AAAAATGTTT TGAGTCTGAG
  TCTAGCCTGG GCAGCACTGT GAGTTCCAGA CCAGTTTAAG CTACACAGTG CGTCCCTGTC
  TCAAACCAAG CAAACAAGTA AATAATAGTA AAACCCAAAA GCAAACATAA CAACAAGCAA
  ACCAAAGAGA ATGCCAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604801	NES09102479	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27386971					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604801	NES09102479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91069656 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	954 bp downstream
Cpgi11902	CpG island 11902	1979 bp distal
Rr560677	regulatory region 560677	1267 bp distal
Rr560679	regulatory region 560679	1696 bp distal
Rr560680	regulatory region 560680	1310 bp distal