rs27386972 SNP Detail

Summary

• ID
  rs27386972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91067615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG CGCTGGCCGT AAACCCTGCA
  Y
  GCTGGAGGCG GAGCCAGGCG GCGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37604802	NES09102499	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T		C	T	C		C	C	T	C		C
ss45249163	mCV24870350	ABI	CRAMUS_MOUSE	f	SNP		C					T	C
ss146923712	ENSMUSSNP1874663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320392009	CHEV_2_91077427	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27386972					SNP	T	C	T	C	T	T	T	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604802	NES09102499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91067615 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	within coordinates
Cpgi11902	CpG island 11902	within coordinates
Ddb2	damage specific DNA binding protein 2	288 bp upstream
Rr397126	regulatory region 397126	within coordinates
Rr560675	regulatory region 560675	1650 bp distal
Rr560676	regulatory region 560676	125 bp distal
Rr560677	regulatory region 560677	within coordinates
Rr560678	regulatory region 560678	7 bp proximal
Rr560679	regulatory region 560679	324 bp proximal
Rr560680	regulatory region 560680	710 bp proximal
Tssr18884	transcription start site region 18884	125 bp downstream
Tssr18885	transcription start site region 18885	86 bp downstream
Tssr25176	transcription start site region 25176	415 bp upstream
Tssr25177	transcription start site region 25177	398 bp upstream
Tssr25178	transcription start site region 25178	349 bp upstream
Tssr25179	transcription start site region 25179	305 bp upstream
Tssr25180	transcription start site region 25180	281 bp upstream