rs27386977 SNP Detail

Summary

• ID
  rs27386977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91066797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGGA ATTTCAGACT
  CTCAGAGCTA ACATAACCGA GAGGCTATGA AAGGGAGGAT TACTTTGAAA CAGTAGATGT
  GTAAAACTTC TGGAACAAGG AAAGTGGGGA CTGTGGCTTT TACGGTGATG GCACTCATCT
  GACTCTTTCT GTCACCTGGG GTAGAGGTGG GGGGGCTGTT CAACTTAAAA CTCTCTGCTG
  W
  CAATGAACTG GCCAATAAAA CCAGTCGGCA GCGTGTGGCT CAGTGGCAGC CCACTTGCTG
  AGAGAACTGG AGGCCTGGGT TCGAACCCTC GATCTCCCAA ATAAAATCAC AGCCTGAGGC
  GACAGAAGCC AAGAACTGCT TCAGAAGCCC AGGCACAAGC ACCCACCACC CCAGCTTCAG
  CCTCTGGCGC GAGCACCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604807	NES09102493	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27386977					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604807	NES09102493	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91066797 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	694 bp upstream
Cpgi11902	CpG island 11902	108 bp proximal
Ddb2	damage specific DNA binding protein 2	within coordinates
Rr397126	regulatory region 397126	520 bp upstream
Rr560675	regulatory region 560675	832 bp distal
Rr560676	regulatory region 560676	423 bp proximal
Rr560677	regulatory region 560677	694 bp proximal
Rr560678	regulatory region 560678	825 bp proximal
Rr560679	regulatory region 560679	1142 bp proximal
Rr560680	regulatory region 560680	1528 bp proximal
Tssr18884	transcription start site region 18884	658 bp upstream
Tssr18885	transcription start site region 18885	720 bp upstream
Tssr25176	transcription start site region 25176	388 bp downstream
Tssr25177	transcription start site region 25177	417 bp downstream
Tssr25178	transcription start site region 25178	425 bp downstream
Tssr25179	transcription start site region 25179	473 bp downstream
Tssr25180	transcription start site region 25180	515 bp downstream