rs27386978 SNP Detail

Summary

• ID
  rs27386978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91066552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGAAA AACCCTGTCT
  CGAAAAACTA AATAAATAAA TAAATAAATA AACAAACAAA CAAATAAATA AAACAACTCT
  GAATTACCAA GCCCTTCTGG TGGACCCAAT CTATAAGTCC TTTTTTTCTC TTGACAACTT
  TCCTTTCTTT TCATGGCTAA AACCACTCTT ATCAATTTAT CACATTCCTT ATAGCCCCAG
  R
  TTCAAGTCCT GGTAAACCTC TGAGAATGCG CTTTCTGAAG AAAGGAGGGA GGGAATTTCA
  GACTCTCAGA GCTAACATAA CCGAGAGGCT ATGAAAGGGA GGATTACTTT GAAACAGTAG
  ATGTGTAAAA CTTCTGGAAC AAGGAAAGTG GGGACTGTGG CTTTTACGGT GATGGCACTC
  ATCTGACTCT TTCTGTCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604808	NES09102492	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27386978					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604808	NES09102492	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91066552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330069E16Rik	RIKEN cDNA A330069E16 gene			939 bp upstream
Cpgi11902	CpG island 11902			353 bp proximal
Ddb2	damage specific DNA binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr397126	regulatory region 397126			765 bp upstream
Rr560675	regulatory region 560675			587 bp distal
Rr560676	regulatory region 560676			668 bp proximal
Rr560677	regulatory region 560677			939 bp proximal
Rr560678	regulatory region 560678			1070 bp proximal
Rr560679	regulatory region 560679			1387 bp proximal
Rr560680	regulatory region 560680			1773 bp proximal
Tssr18884	transcription start site region 18884			903 bp upstream
Tssr18885	transcription start site region 18885			965 bp upstream
Tssr25176	transcription start site region 25176			633 bp downstream
Tssr25177	transcription start site region 25177			662 bp downstream
Tssr25178	transcription start site region 25178			670 bp downstream
Tssr25179	transcription start site region 25179			718 bp downstream
Tssr25180	transcription start site region 25180			760 bp downstream