rs27387003 SNP Detail

Summary

• ID
  rs27387003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91037257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCCACGAG CAAGTACAGA AGGCCCGGCT TCAGGGGGGT
  GAGTGACAAG GACAACATGC CACTACCCTT TCCTCAGAAC TCTCCAGCAC TGAAAATCTG
  Y
  TGTGGGAGCT TCTCACACAC TAGGCTGCCT AAGATAATTC TCCCGGCCAT CCCTGCTAGT
  TGCCCAAATC TCCCAGTTGT CTGATATTTA GCTAGAGTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37604833	NES09102965	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27387003					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604833	NES09102965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91037257 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
D11Hjk15	DNA segment, Chr 11, H. Jockusch 15	693 bp proximal
Tssr18872	transcription start site region 18872	1083 bp downstream
Tssr18873	transcription start site region 18873	866 bp downstream
Tssr18874	transcription start site region 18874	437 bp downstream
Tssr18875	transcription start site region 18875	386 bp downstream
Tssr18876	transcription start site region 18876	355 bp downstream
Tssr18877	transcription start site region 18877	92 bp downstream
Tssr18878	transcription start site region 18878	898 bp upstream
Tssr18879	transcription start site region 18879	1957 bp upstream