rs27387005 SNP Detail

Summary

• ID
  rs27387005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91036488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACTATG GTTATAAGCC
  TATTGATCCC AGACTCCTTC TCTGCCTGTT TCCTCCTTAA TTTGTAGTTG CTGAAGTTTC
  CTTTGGGTCC ATGTCCCCGT TATGAGCAGC TGCAGAATGA GACTCGGCAG ACACCAGAGT
  ATCAGAACAG AAGTATTCAG AATGCAGTGA GTTGGGGCGT GGGTGTAGGT CATCAGATTG
  Y
  TCTTTCTCCA GAACAGTGCT GATCTCCTGC TCCGTTTTTT ATAGCAATTT CTGAACATGG
  TGGCCAACGA GACAGGGCTT ACAAACGTGA CCCTAGAGAC CATCTGGAAT GTGTATGACA
  CACTCTTTTG TGAGGTGAGC TGACTAAGAT GCCTGTTGGG ATTGCTCTTC TGTCCTCAAC
  AGGTCCAGGT CTCTAGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37604835	NES09102963	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27387005					SNP	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604835	NES09102963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91036488 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
D11Hjk15	DNA segment, Chr 11, H. Jockusch 15	1462 bp proximal
Tssr18872	transcription start site region 18872	314 bp downstream
Tssr18873	transcription start site region 18873	97 bp downstream
Tssr18874	transcription start site region 18874	314 bp upstream
Tssr18875	transcription start site region 18875	366 bp upstream
Tssr18876	transcription start site region 18876	390 bp upstream
Tssr18877	transcription start site region 18877	636 bp upstream
Tssr18878	transcription start site region 18878	1667 bp upstream