rs27387006 SNP Detail

Summary

• ID
  rs27387006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91035747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGGACA GCCAGGGCTA
  CAAAGAGAAA CCCTGTTTTG ACAAAAGAGA AGGAAAAAAA AGTGAATGCC AAGCTGAATT
  AGAGGCACAT ACCTTTAATC CAAGCACTTG GGAGGCAAAG GCTAGTAGAT TCCTGAGTTT
  GAGGCTAGCC TGGTCTTCAT AGTGAGTTTT AGGACAGACC TACATACTGA GATCTTGTCT
  Y
  CATGTGTATG GATGGGGATG TACTATTCTG GCTGACAAGG ACTCTGTTCT TCATGGGAGA
  CAAACCAATT ATTTAAGTCT CCAAGACCAG ATAGTTTACC AAATGAGTGC TTTTGAAGAA
  CAGGAAAGAG TGTTTGAACT AGAGTCATTC CCACAGTCTG AGTGCTTTAT ATAGTGGTGA
  TAGCCTGTAG CTGAATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37604836	NES09102962	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27387006					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604836	NES09102962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91035747 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
Tssr18872	transcription start site region 18872	410 bp upstream
Tssr18873	transcription start site region 18873	623 bp upstream
Tssr18874	transcription start site region 18874	1055 bp upstream
Tssr18875	transcription start site region 18875	1107 bp upstream
Tssr18876	transcription start site region 18876	1131 bp upstream
Tssr18877	transcription start site region 18877	1377 bp upstream