rs27387007 SNP Detail

Summary

• ID
  rs27387007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91035277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCGGGG GAGGGGCAGT
  GAAGACTGGC AAATGTGCTA GCTCCTGAGG TTCTCTGCTT ACCCCAGTGG AGATAGCTGT
  TCCATGGTTA CTGCTTGCAG CCACAGTTGT CTCAATCCTC TAGATTACTG TTCCCTAAAG
  ACCTAGCTCT ACCCTGAGCT TGCCCTTCGC TTCCCTATTT TCTTCCTCCC TTTTCACAAG
  Y
  CACCTCGCTG TTCCTTTTCC CCCCTTCTTC CCATTTATAA AAGGAAAGGG AGTGTGGTGA
  AGAGTGGTAT TTGCCATTTG GACTCTAGGG TATTGCTTTT GTGTTTTTAA ACAGGGTCTC
  ATTTTATGGT ACTGGCTAGT CTTGAACTCA GAGATTTTCC TGTCTCTGCC TCTCAAATTC
  TGGAATTAAG AGTGTGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37604837	NES09102982	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27387007					SNP	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604837	NES09102982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91035277 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
Cpgi11901	CpG island 11901	1855 bp distal
Rr367226	regulatory region 367226	1911 bp downstream
Tssr18870	transcription start site region 18870	1998 bp downstream
Tssr18871	transcription start site region 18871	1665 bp downstream
Tssr18872	transcription start site region 18872	880 bp upstream
Tssr18873	transcription start site region 18873	1093 bp upstream
Tssr18874	transcription start site region 18874	1525 bp upstream
Tssr18875	transcription start site region 18875	1577 bp upstream
Tssr18876	transcription start site region 18876	1601 bp upstream
Tssr18877	transcription start site region 18877	1847 bp upstream