rs27387008 SNP Detail

Summary

• ID
  rs27387008
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91034720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGGATT AAAGGCCACC
  ATGCCCAGCT CCTCTTTGGA CTTTAACTCT CAGGTTTGCC CACAGGAAGG GATGCTACAG
  CACTGGGAGC TGGGCCAGGC CCTGCGGCAA CGCTACCATG GCTTTCTGAA CACCTCTTAC
  CACAGGCAAG AGGTAAGGTT GGGAGTTTGA TTGGCAAAAG GACTGGGATC TTTGGATTAT
  M
  TTCTGACTGC AGAGAATCTA AGGATGAGCC TGGGCAGTCA AGGTTCCCTC TTGAACTTTT
  GGTCCCTGGA CAAGACATCT AAGAGCTGTC TAGAATACGG CTCTGGAGTC TGAAGTGTCT
  CTGCTTGTCT GGGAAAAGAC AAAACTGACC AGGGGTCCAA CTTAGACATG AGGAAGGGTC
  TGATAAAGTA CTTTCTGACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604838	NES09102981	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387008					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604838	NES09102981	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91034720 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
Cpgi11901	CpG island 11901	1298 bp distal
Gm13783	predicted gene 13783	1597 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1541 bp upstream
Rr367226	regulatory region 367226	1354 bp downstream
Rr560670	regulatory region 560670	1608 bp distal
Rr560671	regulatory region 560671	1453 bp distal
Rr560672	regulatory region 560672	1538 bp distal
Tssr18869	transcription start site region 18869	1577 bp downstream
Tssr18870	transcription start site region 18870	1441 bp downstream
Tssr18871	transcription start site region 18871	1108 bp downstream
Tssr18872	transcription start site region 18872	1437 bp upstream
Tssr18873	transcription start site region 18873	1650 bp upstream
Tssr25175	transcription start site region 25175	1681 bp upstream