rs27387009 SNP Detail

Summary

• ID
  rs27387009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91033244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGCGCAA CAGTCCCACC
  CTCGTTCATC ACCGCCAATC GCAAACCTTC TCCATTTGCA TTCCCTCCCA AATTCCGCCT
  TCTCCCACCA GACTTTCTCA TTCCCGGTCT CCCGCAACCC AAAGAAAGAT GGCGAAGGCT
  GCACTTCCGG CAAGTGTCCT TACGAATGCA TCCGGGCGGC TGCAGCAGGT ACCGCCCAAG
  S
  CGTTCCGGCC TCTTGCTACA CAGCCTACAA CAGTGATGGC CGGCAGACAG ACTGGTTGGA
  GCCAGGCGGC TCTTCTCCAG TTCCTTCTTG GCATGTGCCT AACGGTGATG CCACCCATAC
  AGGCCCGGAG TCTACGCTTT GTTACCTTGG TAATGGGTGA CGGAGTCACC AACGGGTTCG
  CCAAAGCTGA AAGGGCAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604839	NES09103027	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387009					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604839	NES09103027	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91033244 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
Cpgi11901	CpG island 11901	within coordinates
Gm13783	predicted gene 13783	121 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	65 bp upstream
Rr367226	regulatory region 367226	within coordinates
Rr560670	regulatory region 560670	132 bp distal
Rr560671	regulatory region 560671	within coordinates
Rr560672	regulatory region 560672	62 bp distal
Tssr18869	transcription start site region 18869	101 bp downstream
Tssr18870	transcription start site region 18870	4 bp upstream
Tssr18871	transcription start site region 18871	359 bp upstream
Tssr25175	transcription start site region 25175	205 bp upstream