rs27387011 SNP Detail

Summary

• ID
  rs27387011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91032413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTTGAA GCCTTCTTAT
  TCTCCCCAAG TCTTTCTCAA GGTGACATCG AAAGTAAAGT TTAGGCAGTA AGGTACATAA
  TTTTATTTGG AGTCCTGGGA CAGTATCAAT TCTGATCAGA TTTGCATTAA AGCATATCAA
  GGGCCCAAGA TCTCATCTGC AACTGTGTGT CACTCTAAGG TTTGGAATCA CAACATCCAG
  R
  CACCCAACTG GCTGCCTGCC TCCAAATCCT AAAGGCTAAT GTCTGGAGGA ACTCTGATTC
  TGTGGCAATT CCAGTTATAT GCCTGCATCA AAACTGATGT AGTTTTCTGA GATTCCTCCC
  ATAAGAATTC AATGTAGTGG GTTTGGGAAA TCGGAACATC CTATGCAATC CAACTCCTCC
  TCAAACATGA CGTTTGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604841	NES09103025	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387011					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604841	NES09103025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91032413 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	817 bp upstream
Cpgi11901	CpG island 11901	523 bp proximal
Gm13783	predicted gene 13783	within coordinates
Gm23390	predicted gene, 23390	1801 bp downstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367226	regulatory region 367226	653 bp upstream
Rr560670	regulatory region 560670	128 bp proximal
Rr560671	regulatory region 560671	700 bp proximal
Rr560672	regulatory region 560672	748 bp proximal
Tssr18869	transcription start site region 18869	724 bp upstream
Tssr18870	transcription start site region 18870	835 bp upstream
Tssr18871	transcription start site region 18871	1190 bp upstream
Tssr25175	transcription start site region 25175	575 bp downstream