rs27387023 SNP Detail

Summary

• ID
  rs27387023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91011640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA TGAAGCTATG AAATAGGACA
  Y
  AGGCAAAAGC CATACTGGGT TCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37604858	NES09103461	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		T	C		T	C
ss45203816	mCV22766135	ABI	CRAMUS_MOUSE	f	SNP		C	T			C	T
ss146923548	ENSMUSSNP3901681	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
ss320391928	CHEV_2_91021452	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27387023					SNP	C	C	T	T	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604858	NES09103461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91011640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	824 bp proximal
Gm74571	predicted gene, 74571	894 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr397125	regulatory region 397125	1804 bp upstream
Rr560660	regulatory region 560660	527 bp proximal
Rr560661	regulatory region 560661	905 bp proximal
Rr560662	regulatory region 560662	1360 bp proximal
Rr560663	regulatory region 560663	1543 bp proximal
Rr560664	regulatory region 560664	1602 bp proximal
Tssr18868	transcription start site region 18868	888 bp upstream
Tssr25161	transcription start site region 25161	1573 bp downstream
Tssr25162	transcription start site region 25162	1646 bp downstream
Tssr25163	transcription start site region 25163	1722 bp downstream