rs27387024 SNP Detail

Summary

• ID
  rs27387024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91011275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCCTGCTTGG TGACCAAACC
  R
  TGCTAGCAGC TGCTACTCCA AACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37604859	NES09103459	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G		G	G		G
ss146923539	ENSMUSSNP3606476	ENSEMBL	ENSEMBL_Sanger	f	SNP				G
ss320391926	CHEV_2_91021087	CHEVERUD	SCREENING_POP	f	SNP							G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27387024					SNP	A	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604859	NES09103459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91011275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1189 bp proximal
Gm74571	predicted gene, 74571	1259 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr560660	regulatory region 560660	892 bp proximal
Rr560661	regulatory region 560661	1270 bp proximal
Rr560662	regulatory region 560662	1725 bp proximal
Rr560663	regulatory region 560663	1908 bp proximal
Rr560664	regulatory region 560664	1967 bp proximal
Tssr18868	transcription start site region 18868	1253 bp upstream
Tssr25161	transcription start site region 25161	1938 bp downstream