rs27387060 SNP Detail

Summary

• ID
  rs27387060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90997071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTTGA AGGTACTTAC
  TAGCAAAAGA CATGATGCCC CCGAAGCCCT CGGTGCTGTT GTTAGAGACA GTGGAGTTGG
  GAGAGCTTGC TCTCGAGTCT GACTCTGCGT CTGAGTCACT TGCCAGCTTC AAGCTGTTGG
  GCCGCAGCAG CTTTTGAGCC CTTGAATGCA CAGTGCCACC TGTGAGTCCC AGGCAGGGGT
  W
  CCTATCTTGG GAGTGGGCCT TATGCTATAC TGCAGATGCC ATTCTTATCC CATAATTTCT
  AAGTCCCTAG TTCAAACAAC TACCCTCTGG CAGAATAGAG TCTATAGACT TTCTGATTAA
  CCTTGCCCAG GGTCACTGCA GTGGGGTCCC TTAGTCGCCC ATCTAAAAAG GATGCCCAGG
  CTCTCACCGA CTGCCACTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37604895	NES09103769	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387060					SNP	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604895	NES09103769	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90997071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Madd	MAP-kinase activating death domain			Intron
				Noncoding-Transcript-Variant
Rr560659	regulatory region 560659			1375 bp distal
Tssr25159	transcription start site region 25159			1898 bp downstream