rs27387180 SNP Detail

Summary

• ID
  rs27387180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152495473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAAGCCAG ATGCAACCTG ATCTCTCTAA CATCAGAAAG
  TGCAGTGCCC CTGACCTCCA CCACAACAGA CACAAGCAAG GCTTTTGTTA GCCTCGATAC
  R
  AGCATGTGGT CATACTATGT AGGCTGGATG GGTGTGAATA AGTTGATAGG GTGCTCAGCT
  AACATTCATG AAGCCCTGGG TCCAATTCAA AGCATAACAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562009	NES08909808	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387180					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562009	NES08909808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152495473 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
Rr374088	regulatory region 374088	within coordinates
Rr567410	regulatory region 567410	within coordinates
Rr567411	regulatory region 567411	492 bp proximal
Rr567412	regulatory region 567412	789 bp proximal
Tssr26849	transcription start site region 26849	700 bp downstream
Tssr26850	transcription start site region 26850	708 bp downstream
Tssr26851	transcription start site region 26851	735 bp downstream
Tssr26852	transcription start site region 26852	761 bp downstream