rs27387189 SNP Detail

Summary

• ID
  rs27387189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152492964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCAAA CATGGTACCA
  CATACCTATA ACCTCAGGAC CCAAGAGGCA AGAGGATGCT GCGTTCAAAG ACCGGCTTAG
  CTGTACAGTA AGACTCTGTC TCAAAACACA AGATCGAAGT AGCGGTCGTT GAGCCCTGAG
  ATGCTCACAA CACAGGCACT TCATCAACTC CCACAGTAGT GAAAGATGTG CATTTTACAG
  R
  TGAGAGTGAA GACTCCAACC TCATGCAAAG TCACAGGCAA CAAATAATAT TAAAGACAAA
  AGAAGAAATG TCTGTTTCTT GTCAGGCATG ATGGTGGCGC ATGCCTTTAA TCCCAGCACT
  CAGGAGGCAG GGGCAGGCAG ATCTCTGTGA GTTCGAGGCC AGCCTGGTCT AAAAAGTGAG
  TTCCTGGGCA GCCAGGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37562018	NES08909871	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27387189					SNP	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562018	NES08909871	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152492964 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1839 bp downstream
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	within coordinates
Gm31791	predicted gene, 31791	1903 bp downstream
Rr374088	regulatory region 374088	1053 bp upstream
Rr567410	regulatory region 567410	1808 bp proximal