rs27387191 SNP Detail

Summary

• ID
  rs27387191
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152492886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGGGAG ATGGAGAATT
  TGGGGCCAGC CTTGGCTACA CAGGAAATTG CATCGCATTT AAGCTATATA GTGAGACCCT
  GTCTCAAACA TGGTACCACA TACCTATAAC CTCAGGACCC AAGAGGCAAG AGGATGCTGC
  GTTCAAAGAC CGGCTTAGCT GTACAGTAAG ACTCTGTCTC AAAACACAAG ATCGAAGTAG
  M
  GGTCGTTGAG CCCTGAGATG CTCACAACAC AGGCACTTCA TCAACTCCCA CAGTAGTGAA
  AGATGTGCAT TTTACAGATG AGAGTGAAGA CTCCAACCTC ATGCAAAGTC ACAGGCAACA
  AATAATATTA AAGACAAAAG AAGAAATGTC TGTTTCTTGT CAGGCATGAT GGTGGCGCAT
  GCCTTTAATC CCAGCACTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37562020	NES08909867	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	A		A	C	C	C		C
ss147970790	ENSMUSSNP3941305	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320562874	CHEV_2_152476702	CHEVERUD	SCREENING_POP	f	SNP									A					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27387191					SNP	C	C	C	C	C	C	C	A	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562020	NES08909867	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152492886 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1917 bp downstream
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	within coordinates
Gm31791	predicted gene, 31791	1825 bp downstream
Rr374088	regulatory region 374088	1131 bp upstream
Rr567410	regulatory region 567410	1886 bp proximal