rs27387248 SNP Detail

Summary

• ID
  rs27387248
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCATGGT GTGCTTTTAA
  ACAGCTTGCT AACTCTCAGT TCCCCACATA GACCACACAG GAATGGAGCA GGAAGCCAGA
  GTGCCAACCT CCACCCAGTT CACTTTGTGA CAGAAATTAT TCAGCATGGG AGTGTTGTTC
  CTGAGCCCCG TGGGCGTGTC TGTCTTCCTC TCCAGCTGTC TTGGCCCATC TGCAGGAACC
  R
  AAGAGCCAGA AACTAAAGGG GTCACACTCA GCAGGACAAG TGGCCTCCAG GACTGCCTCT
  CTGTCACACC AGCTTTCTCC ACTGACACAA ACTTCACTTA TTATTTGACC ACTATGAGTC
  CGCTAGTGGA ATCCACCACC CCTCATTGGG CCACCGCCAC CCAGAACAGC TCCTGTCTCT
  GCTGTCCTTG ACATTCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37562078	NES08910737	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	G		A	A	A	A
ss147969857	ENSMUSSNP4911945	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320562584	CHEV_2_152446728	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27387248					SNP	G	G	A	A	G	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562078	NES08910737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462912 () rs orientation: forward

Symbol	Name	Function Class
Defb25	defensin beta 25	1364 bp downstream
Rr567404	regulatory region 567404	19 bp distal
Tssr26844	transcription start site region 26844	1123 bp downstream
Tssr26845	transcription start site region 26845	1133 bp downstream