rs27387249 SNP Detail

Summary

• ID
  rs27387249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGACAGA TGATAGGAAC
  GATAGGTGCT GGCTGGAATC CAACAAGGTG TGGATGGTTT GGTCTCCCTC TCCCTCTTCA
  TGGCTGTCCC AAGCTAATGC CACCTCGAAG TCACAGTGGC TCAGCTGGCC TCCTGTGTCA
  AAGCTCTTCC ACCCGCCATG GTGTGCTTTT AAACAGCTTG CTAACTCTCA GTTCCCCACA
  Y
  AGACCACACA GGAATGGAGC AGGAAGCCAG AGTGCCAACC TCCACCCAGT TCACTTTGTG
  ACAGAAATTA TTCAGCATGG GAGTGTTGTT CCTGAGCCCC GTGGGCGTGT CTGTCTTCCT
  CTCCAGCTGT CTTGGCCCAT CTGCAGGAAC CAAAGAGCCA GAAACTAAAG GGGTCACACT
  CAGCAGGACA AGTGGCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562079	NES08910736	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387249					SNP	T	T	C	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562079	NES08910736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462760 () rs orientation: forward

Symbol	Name	Function Class
Defb25	defensin beta 25	1516 bp downstream
Rr567404	regulatory region 567404	within coordinates
Tssr26844	transcription start site region 26844	1275 bp downstream
Tssr26845	transcription start site region 26845	1285 bp downstream