rs27387250 SNP Detail

Summary

• ID
  rs27387250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTTCCG AGTTGAGTCT
  ACATCATGGC AAGCTGACAT TTCAAATCAC CAGTGTGTCC CTTTGGGGTT TCCTAAATCA
  GGAAGTTGAG TCTGAATGAG GGCTCAGTCT TGCAGGATCC TCCTCGCCTC CCACTGCTTC
  ACCTATGTAT GACAGATGAT AGGAACGATA GGTGCTGGCT GGAATCCAAC AAGGTGTGGA
  Y
  GGTTTGGTCT CCCTCTCCCT CTTCATGGCT GTCCCAAGCT AATGCCACCT CGAAGTCACA
  GTGGCTCAGC TGGCCTCCTG TGTCAAAGCT CTTCCACCCG CCATGGTGTG CTTTTAAACA
  GCTTGCTAAC TCTCAGTTCC CCACATAGAC CACACAGGAA TGGAGCAGGA AGCCAGAGTG
  CCAACCTCCA CCCAGTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562080	NES08910735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387250					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562080	NES08910735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462614 () rs orientation: forward

Symbol	Name	Function Class
Defb25	defensin beta 25	1662 bp downstream
Rr567404	regulatory region 567404	45 bp proximal
Tssr26844	transcription start site region 26844	1421 bp downstream
Tssr26845	transcription start site region 26845	1431 bp downstream