rs27387252 SNP Detail

Summary

• ID
  rs27387252
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCCAGG GCACGTACGC
  CTTTTGCTCA GTTGCAATGA CACCACAGTG ATTTGTATCA CTGGGCCCTT TCAAAGATGT
  TGAGCCACCT TCTGTGACCC TGCATCCTCC ACCAGCCACC CCATTATAGG CTGTGGTGAT
  TTCCACTTGA CAGCAGAGAA ACCTGACAGT CAGGCTCAGG AAGGAACTGG CTCTGGGTCC
  S
  ACAGTCAAGA AAATCCTGCA CAGATGTGCC CCCAGGCCAG CCTGGTCTAG AGGATTTGTC
  ATCAAGAGTC TCTTCCGAGT TGAGTCTACA TCATGGCAAG CTGACATTTC AAATCACCAG
  TGTGTCCCTT TGGGGTTTCC TAAATCAGGA AGTTGAGTCT GAATGAGGGC TCAGTCTTGC
  AGGATCCTCC TCGCCTCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37562082	NES08910763	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27387252					SNP	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562082	NES08910763	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462346 () rs orientation: forward

Symbol	Name	Function Class
Defb25	defensin beta 25	1930 bp downstream
Rr567404	regulatory region 567404	313 bp proximal
Tssr26844	transcription start site region 26844	1689 bp downstream
Tssr26845	transcription start site region 26845	1699 bp downstream