rs27387253 SNP Detail

Summary

• ID
  rs27387253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA TTTGTATCAC TGGGCCCTTT
  Y
  AAAGATGTTG AGCCACCTTC TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37562083	NES08910762	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T	T		C	C	C	C
ss147969838	ENSMUSSNP2279398	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
ss320562579	CHEV_2_152446033	CHEVERUD	SCREENING_POP	f	SNP								T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27387253					SNP	T	C	C	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562083	NES08910762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462217 () rs orientation: forward

Symbol	Name	Function Class
Rr567404	regulatory region 567404	442 bp proximal
Tssr26844	transcription start site region 26844	1818 bp downstream
Tssr26845	transcription start site region 26845	1828 bp downstream