rs27387254 SNP Detail

Summary

• ID
  rs27387254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTTGCC TTCATTCTGA
  ATGTATAGAG GCATTTTTCT CAATTGAGGC TCCCTCCTCT CAGACAACTC TAGCTTGTGT
  CAAGCTGACA TGAAACTATT CAACACAGTC AGCCGCTGAG AAAAGCATGG AAATGCTTTG
  TACTACTCCT GAGGATTTCC AGTGATACAA CTGTTTTGAG AAGGTGGCCA GGGCACGTAC
  R
  CCTTTTGCTC AGTTGCAATG ACACCACAGT GATTTGTATC ACTGGGCCCT TTCAAAGATG
  TTGAGCCACC TTCTGTGACC CTGCATCCTC CACCAGCCAC CCCATTATAG GCTGTGGTGA
  TTTCCACTTG ACAGCAGAGA AACCTGACAG TCAGGCTCAG GAAGGAACTG GCTCTGGGTC
  CGACAGTCAA GAAAATCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37562084	NES08910761	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27387254					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562084	NES08910761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462164 () rs orientation: forward

Symbol	Name	Function Class
Rr567404	regulatory region 567404	495 bp proximal
Tssr26844	transcription start site region 26844	1871 bp downstream
Tssr26845	transcription start site region 26845	1881 bp downstream