rs27388250 SNP Detail

Summary

• ID
  rs27388250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150630047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCTTTG ACAGTTCTCA
  CCACCCCAAC CCCCAAAACT TCTCAGCTCT GTCTGCTGGA CTGCTAACTC TGTGCAATTA
  AGCTGGCTTC AAACCCACGG AAACCCACCA GCCTCTGCCT CCAGAGTGCT GGGATTATTA
  AGGCGTGTGC CAGCTCCACC AGGTCCCCCA GTCCTCCTTA TTCTGTTCCG TTTATGTTTC
  Y
  AGGTAATTGC TGTTCCTAAA TACACAGGTA TGCATATTTG TATGCTGCAC AATTTTGTGG
  CTTTTATTTC ATCCGAAACC ATTTGTGGCT TCACTCATAA ACAGGGCTCT GGGTCAGTAA
  TACATACTGG TGCTTTTAAG CTTATGCAGG TATCATATTT TTACACATCC CCTGTTGCAA
  GAATTTCTCT CTCTCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568182	NES08919230	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388250					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568182	NES08919230	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150630047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	755 bp distal
Gm30141	predicted gene, 30141	1433 bp upstream
Gm57834	predicted gene, 57834	492 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	1281 bp downstream
Rr567101	regulatory region 567101	1382 bp distal
Rr567102	regulatory region 567102	650 bp proximal
Tssr20709	transcription start site region 20709	1333 bp downstream
Tssr20710	transcription start site region 20710	1310 bp downstream